Cluster Partition

Cluster Partitioner

This module partitions the input molecular system by walking the connectivity table and assigning all atoms that are bonded together into a single partition. The end result is that if the input is a cluster of molecules, each molecule is assigned to its own partition. If the input is a single molecule the result is a single partition. And if there are zero atoms in the input molecular system you get back zero partitions.

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Property Types

The following is a list of property types that this module satisfies.

• ghostfragment::pt::NuclearGraphToFragments

Module Inputs

This section details the full list of inputs that the module accepts. Inputs that are not listed as optional must have their value set before the module can be run. Inputs can be set manually by calling the module’s change_input function or by passing arguments to a property type.

Quick Reference

The following table provides a quick summary of the inputs available to this module. The columns are:

• Key: The key used to retrieve the option,

• Default : The initial value, if one exists, and

• Description : A human readable description of what the option is used for.

Key	Default	Description
Molecular Graph	N/A	N/A

Detailed Descriptions

The following subsections provide detailed descriptions of each input recognized by this module. The subsection headings are the name of the input. Within each subsection we list:

• Description : A human readable description of what the option is used for.

• Default Value : The initial value, if one exists.

• Optional? : Whether the value must be set inorder for the module to run.

• Opaque? : Does the value of the input influence memoization?.

• Domain Restrictions : Criteria a value must obey to be deemed valid.

Molecular Graph

• Description : N/A

• Default Value : N/A

• Optional? : False

• Opaque? : True

• Domain Restrictions :

  • Type == ghostfragment::NuclearGraph

Module Results

This section tabulates the full list of results that the module returns. The columns respectively are:

• Key: What the result is called

• Type: The C++ type of the result

• Description: What the result is/how it was computed.

Note

A given property type will only return a subset of the available results. Additional results can be accessed by using other property types or by using the Module class’s advanced API.

Key	Type	Description
Fragments	chemist::fragmenting::FragmentedNuclei<chemist::Nuclei>	N/A

Submodules

The module defines no submodules.